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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_9883472_9883625_F

Intron Information:

Intron Rank:
144479
Intron Class:
major
Intron Phase:
Intron Coordinates:
9883472 - 9883625
Intron Length:
154

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGCTGC
5'SS Class:
major
3'SS Sequence:
AATTGTTCTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCCTAAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
60.5
41.4
Major BPS
100
1.24
0.5
100
0
Major PPT
65.7
0.35
1.1
65
40.6
Minor 5ss
39.2
-1.2
3
50.7
46
Minor BPS
80.6
1.04
1.5
95.75
31

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027855
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037984
9870870 - 9884528
13659