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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_9935515_9966541_R

Intron Information:

Intron Rank:
149312
Intron Class:
major
Intron Phase:
Intron Coordinates:
9935515 - 9966541
Intron Length:
31027

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGATCC
5'SS Class:
strong_major
3'SS Sequence:
TCCTTCTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TGTTGCTTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
78.6
29.6
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
87.5
0.84
0.7
80
32
Minor 5ss
39.2
-1.2
3
51.6
45.1
Minor BPS
75.6
0.8
1.7
84.27
35.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027832
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017995
9935189 - 9967496
32308