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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_997195_997696_F

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
997195 - 997696
Intron Length:
502

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TTTATTGAAAAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
GTTCTTTTAACA
Flanking Amino Acid:
GWRVPVVSNKRLTRDSDDED
Intron Amino Acid Position:
528

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
74.8
38.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
58.7
0.2
1.2
61.2
43
Minor 5ss
37
-1.5
3.2
48.2
47.9
Minor BPS
72.9
0.71
1.1
77.15
33.2

Associated Gene:

Gene:
TMEM132C
Ensembl Gene ID:
ENSAPLG00000011520
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012003
853775 - 1011790
158016