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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_10046018_10048301_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10046018 - 10048301
Intron Length:
2284

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCTTTC
5'SS Class:
major
3'SS Sequence:
TTTTGTAACCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TCTTTTGTAACC
Flanking Amino Acid:
YLCKCIPGYTGINCDAEIDE
Intron Amino Acid Position:
259

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.58
1.2
73.4
38.9
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
62.9
0.29
1.1
61.7
42.8
Minor 5ss
49.2
-0
2.8
70.3
40.3
Minor BPS
59.7
0.28
2
72.92
38.9

Associated Gene:

Gene:
CRB2
Ensembl Gene ID:
ENSAPLG00000006162
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044807
10036123 - 10070023
33901
ENSAPLT00000042630
10008127 - 10071453
63327
ENSAPLT00000039764
10008127 - 10071225
63099
ENSAPLT00000006391
10036123 - 10070023
33901