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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_10048498_10049036_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10048498 - 10049036
Intron Length:
539

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TGTTGCCCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATGAA
U12 Branch Point Sequence:
GCCTTCTGCATT
Flanking Amino Acid:
HNGTCHDLINSYQCDCSDTG
Intron Amino Acid Position:
324

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.8
85.9
23.9
Major BPS
58.9
0.22
1
49.8
35.1
Major PPT
73
0.52
0.9
65.6
36.2
Minor 5ss
29.7
-2.3
3
39.4
46.1
Minor BPS
46.6
-0.1
1.9
60.39
43.9

Associated Gene:

Gene:
CRB2
Ensembl Gene ID:
ENSAPLG00000006162
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039764
10008127 - 10071225
63099
ENSAPLT00000006391
10036123 - 10070023
33901
ENSAPLT00000044807
10036123 - 10070023
33901
ENSAPLT00000042630
10008127 - 10071453
63327