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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_10049836_10050319_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10049836 - 10050319
Intron Length:
484

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAACTAT
5'SS Class:
major
3'SS Sequence:
TTTCACTTCAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TGTGTTTTCACT
Flanking Amino Acid:
FQCWCQPGFAGETCFTNIDE
Intron Amino Acid Position:
432

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
73.4
33.5
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
70.4
0.46
1
70.8
33.4
Minor 5ss
39.4
-1.2
3.2
55
49.2
Minor BPS
55.5
0.25
1.9
75.46
41.9

Associated Gene:

Gene:
CRB2
Ensembl Gene ID:
ENSAPLG00000006162
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006391
10036123 - 10070023
33901
ENSAPLT00000044807
10036123 - 10070023
33901
ENSAPLT00000042630
10008127 - 10071453
63327
ENSAPLT00000039764
10008127 - 10071225
63099