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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_10050434_10059685_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10050434 - 10059685
Intron Length:
9252

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGCTG
5'SS Class:
major
3'SS Sequence:
ATCTCTTTCGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
CGTTTCTAAATC
Flanking Amino Acid:
FLCRCLPGYSGVECAVNINE
Intron Amino Acid Position:
470

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.66
1
66.2
44.9
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
81.2
0.7
0.8
76.5
31.3
Minor 5ss
34.4
-1.8
3.4
47.3
48.1
Minor BPS
58.9
0.26
1.7
66
40.4

Associated Gene:

Gene:
CRB2
Ensembl Gene ID:
ENSAPLG00000006162
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039764
10008127 - 10071225
63099
ENSAPLT00000006391
10036123 - 10070023
33901
ENSAPLT00000044807
10036123 - 10070023
33901
ENSAPLT00000042630
10008127 - 10071453
63327