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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_10061998_10063612_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10061998 - 10063612
Intron Length:
1615

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACATGAA
U12 Branch Point Sequence:
TGCTCCTGCACT
Flanking Amino Acid:
NGCISDNTCKSEPCQNGGQC
Intron Amino Acid Position:
968

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.8
84.6
33.3
Major BPS
54.1
0.1
1.1
45.7
37.1
Major PPT
93.6
0.98
0.7
92.3
26.6
Minor 5ss
35.2
-1.7
3
49.5
46.3
Minor BPS
58.8
0.36
2
77.65
44.4

Associated Gene:

Gene:
CRB2
Ensembl Gene ID:
ENSAPLG00000006162
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044807
10036123 - 10070023
33901
ENSAPLT00000042630
10008127 - 10071453
63327
ENSAPLT00000039764
10008127 - 10071225
63099
ENSAPLT00000006391
10036123 - 10070023
33901