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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_10065508_10066633_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10065508 - 10066633
Intron Length:
1126

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGA|GTAGGTGCC
5'SS Class:
major
3'SS Sequence:
TTGTTTTTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAA
U12 Branch Point Sequence:
ACTGCTTTAAAG
Flanking Amino Acid:
CLPHFSGPRCEWPFPPEQCG
Intron Amino Acid Position:
1312

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.3
0.36
1.1
62.6
37.5
Major BPS
78
0.7
0.9
79.6
29.1
Major PPT
86.7
0.83
0.8
80.5
37
Minor 5ss
33.8
-1.8
3.4
40.5
39.8
Minor BPS
57.1
0.08
1.6
58.47
43.5

Associated Gene:

Gene:
CRB2
Ensembl Gene ID:
ENSAPLG00000006162
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042630
10008127 - 10071453
63327
ENSAPLT00000039764
10008127 - 10071225
63099
ENSAPLT00000006391
10036123 - 10070023
33901
ENSAPLT00000044807
10036123 - 10070023
33901