About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_10110419_10116494_R


Intron Information:

Intron Rank:
18

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
10110419 - 10116494

Intron Length:
6076

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
AAG|GTACTTGAA

5'SS Class:
major

3'SS Sequence:
TGCTACCATACAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TTTTCAC

U12 Branch Point Sequence:
TGCTTTTCACCT

Flanking Amino Acid:
KEVKNRLKQKDVAENGCSTA

Intron Amino Acid Position:
452

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
76.3
0.62
1.1
70.6
35.2

Major BPS
90.1
0.99
0.7
91.6
20.3

Major PPT
69.4
0.44
1
62
38.8

Minor 5ss
31
-2.2
3.3
40.5
45.6

Minor BPS
49.1
0.01
1.8
67.87
43.5

Associated Gene:

Gene:
DENND1A

Ensembl Gene ID:

Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

10077824 - 10267395
189572

10077824 - 10267395
189572

10077824 - 10267395
189572