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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_10116552_10117628_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10116552 - 10117628
Intron Length:
1077

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAAGTATC
5'SS Class:
major
3'SS Sequence:
ATTTTTCATGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTAACTTAAAT
Flanking Amino Acid:
NPAMKTVYKFAKDHAKMGIK
Intron Amino Acid Position:
433

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
80
32.8
Major BPS
100
1.24
0.5
100
0
Major PPT
83.1
0.74
0.9
78.5
34.4
Minor 5ss
42.9
-0.8
2.8
60.8
37.7
Minor BPS
70
0.7
1.6
87.72
36.6

Associated Gene:

Gene:
DENND1A
Ensembl Gene ID:
ENSAPLG00000005294
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047569
10077824 - 10267395
189572
ENSAPLT00000020134
10077824 - 10267395
189572
ENSAPLT00000005532
10077824 - 10267395
189572