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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_10120141_10120707_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10120141 - 10120707
Intron Length:
567

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTGTCT
5'SS Class:
major
3'SS Sequence:
GTTGATGTTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TCTCTTTTAACG
Flanking Amino Acid:
NAIQLQLFKQFIDGRLDLLN
Intron Amino Acid Position:
366

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.5
1.1
66.1
40.1
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
68.9
0.42
1
62.1
44.1
Minor 5ss
38.4
-1.3
3.5
57.3
46.9
Minor BPS
68.2
0.43
1.3
67.89
40.1

Associated Gene:

Gene:
DENND1A
Ensembl Gene ID:
ENSAPLG00000005294
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020134
10077824 - 10267395
189572
ENSAPLT00000005532
10077824 - 10267395
189572
ENSAPLT00000047569
10077824 - 10267395
189572
ENSAPLT00000034330
10077824 - 10267395
189572