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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_10149034_10156294_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10149034 - 10156294
Intron Length:
7261

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTATGTATG
5'SS Class:
strong_major
3'SS Sequence:
TATGTGATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAA
U12 Branch Point Sequence:
GTAATCTAAACT
Flanking Amino Acid:
DDLQSLPNDVVSALKSRLKK
Intron Amino Acid Position:
290

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.74
0.9
76.2
39
Major BPS
76.5
0.66
0.8
75.9
24.9
Major PPT
75
0.56
1
70.6
44.1
Minor 5ss
45.6
-0.5
2.5
56.4
42.4
Minor BPS
58.5
0.34
1.7
74.13
42.3

Associated Gene:

Gene:
DENND1A
Ensembl Gene ID:
ENSAPLG00000005294
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005532
10077824 - 10267395
189572
ENSAPLT00000047569
10077824 - 10267395
189572
ENSAPLT00000034330
10077824 - 10267395
189572
ENSAPLT00000020134
10077824 - 10267395
189572