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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_10165228_10172328_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10165228 - 10172328
Intron Length:
7101

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGGCTA
5'SS Class:
strong_major
3'SS Sequence:
TTCTACTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTAAA
U12 Branch Point Sequence:
TTTTCTTCTACT
Flanking Amino Acid:
VLPPHLLDYCCAPMPYLIGI
Intron Amino Acid Position:
240

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
1
71.4
40.1
Major BPS
66.4
0.41
1.1
67.7
36.5
Major PPT
86
0.81
0.8
80.6
31
Minor 5ss
34.5
-1.8
3.4
44.3
44.6
Minor BPS
66.3
0.59
1.9
88.46
36.4

Associated Gene:

Gene:
DENND1A
Ensembl Gene ID:
ENSAPLG00000005294
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034330
10077824 - 10267395
189572
ENSAPLT00000020134
10077824 - 10267395
189572
ENSAPLT00000005532
10077824 - 10267395
189572
ENSAPLT00000047569
10077824 - 10267395
189572