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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_10180468_10187159_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10180468 - 10187159
Intron Length:
6692

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCTTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
ATACCATGAATC
Flanking Amino Acid:
IRELPSIPENRNLTEYFVAV
Intron Amino Acid Position:
170

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
82.6
29.4
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
79.4
0.66
0.7
72.9
31.9
Minor 5ss
35.4
-1.7
2.9
48.5
40.3
Minor BPS
49.9
-0
1.7
62.03
36.4

Associated Gene:

Gene:
DENND1A
Ensembl Gene ID:
ENSAPLG00000005294
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034330
10077824 - 10267395
189572
ENSAPLT00000020134
10077824 - 10267395
189572
ENSAPLT00000005532
10077824 - 10267395
189572
ENSAPLT00000047569
10077824 - 10267395
189572