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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_10187214_10189346_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10187214 - 10189346
Intron Length:
2133

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTTTTATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
TCTTCTTTTATA
Flanking Amino Acid:
EPGTSVHLGVHSYFTVPDIR
Intron Amino Acid Position:
152

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.8
79.4
28.8
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
87.7
0.85
0.6
83.7
24.6
Minor 5ss
32.1
-2
3.1
36.8
41.9
Minor BPS
66.7
0.52
1.6
74.49
37.5

Associated Gene:

Gene:
DENND1A
Ensembl Gene ID:
ENSAPLG00000005294
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005532
10077824 - 10267395
189572
ENSAPLT00000047569
10077824 - 10267395
189572
ENSAPLT00000034330
10077824 - 10267395
189572
ENSAPLT00000020134
10077824 - 10267395
189572