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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_10189428_10190542_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10189428 - 10190542
Intron Length:
1115

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTATTC
5'SS Class:
major
3'SS Sequence:
CTTCTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTGT
U12 Branch Point Sequence:
TTTGCTTTGCTT
Flanking Amino Acid:
VLADYSAKGQDNQRSELLET
Intron Amino Acid Position:
125

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.58
1
70.5
34.3
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
92.7
0.96
0.6
91.6
19.6
Minor 5ss
48.7
-0.1
2.7
68.2
42.9
Minor BPS
45
-0.3
3.5
78.01
39.5

Associated Gene:

Gene:
DENND1A
Ensembl Gene ID:
ENSAPLG00000005294
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005532
10077824 - 10267395
189572
ENSAPLT00000047569
10077824 - 10267395
189572
ENSAPLT00000034330
10077824 - 10267395
189572
ENSAPLT00000020134
10077824 - 10267395
189572