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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_10190613_10211876_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10190613 - 10211876
Intron Length:
21264

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTCAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTGTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTATAC
U12 Branch Point Sequence:
TGTTTTTTGTTT
Flanking Amino Acid:
SGAKSCFCILSYLPWFEVFY
Intron Amino Acid Position:
101

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.1
1.06
0.7
83.2
30.8
Major BPS
54.2
0.1
1.2
52.7
42.9
Major PPT
89
0.88
0.7
88.9
28.2
Minor 5ss
33.5
-1.9
2.9
40.7
45.5
Minor BPS
44.5
-0.3
3.4
74.33
37.3

Associated Gene:

Gene:
DENND1A
Ensembl Gene ID:
ENSAPLG00000005294
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034330
10077824 - 10267395
189572
ENSAPLT00000020134
10077824 - 10267395
189572
ENSAPLT00000005532
10077824 - 10267395
189572
ENSAPLT00000047569
10077824 - 10267395
189572