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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_10215564_10233766_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10215564 - 10233766
Intron Length:
18203

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGGAAT
5'SS Class:
major
3'SS Sequence:
TTTCTCTCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATAAAT
U12 Branch Point Sequence:
TTTCTCTCCACA
Flanking Amino Acid:
RQFPEDYSDQEVLQTLTKFC
Intron Amino Acid Position:
45

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.1
0.52
1.2
72.5
38.2
Major BPS
74.5
0.61
1
79.6
29.1
Major PPT
85
0.79
0.7
80.3
25.2
Minor 5ss
36.4
-1.5
3
48.6
47.3
Minor BPS
53.5
0.1
2
72.76
39.1

Associated Gene:

Gene:
DENND1A
Ensembl Gene ID:
ENSAPLG00000005294
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034330
10077824 - 10267395
189572
ENSAPLT00000020134
10077824 - 10267395
189572
ENSAPLT00000005532
10077824 - 10267395
189572
ENSAPLT00000047569
10077824 - 10267395
189572