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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_10233811_10260348_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10233811 - 10260348
Intron Length:
26538

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTGTTT
5'SS Class:
major
3'SS Sequence:
CAATTATTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTAATATTATCT
Flanking Amino Acid:
TYSGISCIGKDPEVRRQFPE
Intron Amino Acid Position:
30

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.9
0.54
1.1
72.5
39.4
Major BPS
83
0.82
0.8
82
24.9
Major PPT
76.3
0.59
0.9
69.2
40.4
Minor 5ss
41.7
-0.9
3.6
64.7
46.6
Minor BPS
52
0.14
1.9
74.71
41.6

Associated Gene:

Gene:
DENND1A
Ensembl Gene ID:
ENSAPLG00000005294
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047569
10077824 - 10267395
189572
ENSAPLT00000034330
10077824 - 10267395
189572
ENSAPLT00000020134
10077824 - 10267395
189572
ENSAPLT00000005532
10077824 - 10267395
189572