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Intron Name: Anas_platyrhynchos_platyrhynchos_18_10305825_10312632_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10305825 - 10312632

Intron Length:

6808

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGAAGA

5'SS Class:

strong_major

3'SS Sequence:

TAAACTATTTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTAAA

U12 Branch Point Sequence:

TTATATTAAACT

Flanking Amino Acid:

KTGLTKRVLQVWFQNARAKF

Intron Amino Acid Position:

273

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.4

0.98

0.8

80.8

33.7

Major BPS

82.6

0.81

0.8

82.2

24.5

Major PPT

71.4

0.48

67.1

43.1

Minor 5ss

32.8

-2

2.9

40.7

45.1

Minor BPS

61.7

0.44

1.8

81.67

39.8

Associated Gene:

Gene:

LHX2

Ensembl Gene ID:

ENSAPLG00000005909

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041296

10296771 - 10313461

16691

ENSAPLT00000006127

10284803 - 10313461

28659