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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_10445791_10449251_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10445791 - 10449251
Intron Length:
3461

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGAAG
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTTCCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTATTTATTT
Flanking Amino Acid:
DAGDLSQMIKYFKKQKRLIP
Intron Amino Acid Position:
116

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.94
0.8
78.6
37.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
84.6
0.78
0.7
80
25.5
Minor 5ss
31.6
-2.1
3.1
38.7
46.6
Minor BPS
64.4
0.53
1.7
84.57
36.4

Associated Gene:

Gene:
NEK6
Ensembl Gene ID:
ENSAPLG00000005036
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005238
10434908 - 10470831
35924