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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_10449361_10450600_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10449361 - 10450600
Intron Length:
1240

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACATTA
5'SS Class:
major
3'SS Sequence:
TTTCTCCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAC
U12 Branch Point Sequence:
GTGGCTTTGACC
Flanking Amino Acid:
HMHSRRVMHRDIKPANVFIT
Intron Amino Acid Position:
152

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1.1
77.8
33.3
Major BPS
74.1
0.6
1
66.7
39.9
Major PPT
90
0.9
0.6
85
22.5
Minor 5ss
47.1
-0.3
2.9
65.1
46.1
Minor BPS
61.6
0.35
1.4
65.85
40.5

Associated Gene:

Gene:
NEK6
Ensembl Gene ID:
ENSAPLG00000005036
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005238
10434908 - 10470831
35924