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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_10450709_10460454_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10450709 - 10460454
Intron Length:
9746

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGATGA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTCTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
ATTTTCTTTACA
Flanking Amino Acid:
SSKTTAAHSLVGTPYYMSPE
Intron Amino Acid Position:
188

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
77.8
33.3
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
90
0.9
0.7
84.5
29.7
Minor 5ss
37.3
-1.4
3
47.8
47.6
Minor BPS
72.5
0.7
1.5
81.25
33.4

Associated Gene:

Gene:
NEK6
Ensembl Gene ID:
ENSAPLG00000005036
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005238
10434908 - 10470831
35924