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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_10460550_10465768_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10460550 - 10465768
Intron Length:
5219

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTATC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
CATTTCTGAAAC
Flanking Amino Acid:
IWSLGCLLYEMAALQSPFYG
Intron Amino Acid Position:
220

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.8
88.1
25.2
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
92.4
0.95
0.6
85.4
29.3
Minor 5ss
42
-0.9
2.8
55.1
35.9
Minor BPS
57.9
0.23
1.6
65.53
39.6

Associated Gene:

Gene:
NEK6
Ensembl Gene ID:
ENSAPLG00000005036
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005238
10434908 - 10470831
35924