Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_10465883_10469983_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10465883 - 10469983

Intron Length:

4101

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAATTGG

5'SS Class:

strong_major

3'SS Sequence:

TTCTGTCTTTCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTGCAT

U12 Branch Point Sequence:

CGTGTTTGCATG

Flanking Amino Acid:

PLPAEHYSEKLRELVSMCIY

Intron Amino Acid Position:

258

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.6

0.82

0.9

72.1

40.4

Major BPS

0.62

1.4

85.7

34.9

Major PPT

86.9

0.83

0.7

84.6

30.4

Minor 5ss

38.9

-1.2

2.9

49.7

46.6

Minor BPS

39.5

-0.9

1.8

39.29

39.2

Associated Gene:

Gene:

NEK6

Ensembl Gene ID:

ENSAPLG00000005036

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005238

10434908 - 10470831

35924