Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_10473147_10475109_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10473147 - 10475109

Intron Length:

1963

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTTGGTGTT

5'SS Class:

major

3'SS Sequence:

TTTTCTTTAACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTTCAC

U12 Branch Point Sequence:

TTTTCTTTAACA

Flanking Amino Acid:

PYDVANRKGERYGRYKCEKG

Intron Amino Acid Position:

241

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.2

0.62

1.2

77.3

37.8

Major BPS

77.7

0.69

30.2

Major PPT

87.5

0.84

0.8

84.9

28.4

Minor 5ss

33.6

-1.9

3.5

49.5

46.8

Minor BPS

92.1

1.32

0.7

95.26

19.9

Associated Gene:

Gene:

PSMB7

Ensembl Gene ID:

ENSAPLG00000004904

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005065

10472900 - 10500314

27415