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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_10475262_10488587_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10475262 - 10488587
Intron Length:
13326

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TAAACTTTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TTTTTCTAAACT
Flanking Amino Acid:
FEDKYKPDMEEEEAKQLVRD
Intron Amino Acid Position:
191

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.9
1.03
0.7
89.8
22.3
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
76
0.58
1
68.9
41.3
Minor 5ss
35.1
-1.7
3.1
48.5
47.2
Minor BPS
78.9
0.99
1.5
95.32
31.5

Associated Gene:

Gene:
PSMB7
Ensembl Gene ID:
ENSAPLG00000004904
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005065
10472900 - 10500314
27415