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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_10498358_10498872_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10498358 - 10498872
Intron Length:
515

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTA|GTAAGTGTG
5'SS Class:
major
3'SS Sequence:
CAATATTTCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGCAAT
U12 Branch Point Sequence:
CCTCTTCCAACT
Flanking Amino Acid:
SKIHFISPNIYCCGAGTAAD
Intron Amino Acid Position:
85

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
71.7
38.4
Major BPS
61.8
0.29
1.4
70.7
42.6
Major PPT
70.7
0.47
1
61.5
43.7
Minor 5ss
38.2
-1.3
3.3
50.9
41.1
Minor BPS
45.4
-0.2
1.8
61.49
42.7

Associated Gene:

Gene:
PSMB7
Ensembl Gene ID:
ENSAPLG00000004904
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005065
10472900 - 10500314
27415