About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_10498971_10499143_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10498971 - 10499143
Intron Length:
173

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGGGC
5'SS Class:
strong_major
3'SS Sequence:
TCTCCTTGCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGGGAG
U12 Branch Point Sequence:
GGCTCTGGGAGT
Flanking Amino Acid:
GTTIAGVVFKDGVVLGADTR
Intron Amino Acid Position:
53

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
67.9
37.4
Major BPS
38.2
-0.7
1.7
32.2
43.7
Major PPT
76.8
0.6
0.9
76
32.5
Minor 5ss
24.1
-3
3.3
32
42.8
Minor BPS
39.1
-0.7
2.2
52.64
42.6

Associated Gene:

Gene:
PSMB7
Ensembl Gene ID:
ENSAPLG00000004904
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005065
10472900 - 10500314
27415