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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_10501863_10501969_F

Intron Information:

Intron Rank:
148054
Intron Class:
major
Intron Phase:
Intron Coordinates:
10501863 - 10501969
Intron Length:
107

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGCTC
5'SS Class:
major
3'SS Sequence:
TTCTTCCTCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCAGAT
U12 Branch Point Sequence:
TTTCAGATAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
68.9
38.9
Major BPS
74.1
0.6
1
69
38.9
Major PPT
86
0.81
0.7
84.6
23.1
Minor 5ss
33.9
-1.8
3.7
49.6
47
Minor BPS
44.7
-0.3
2.4
73.26
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029707
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027863
10501087 - 10504544
3458