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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_10502122_10504437_F

Intron Information:

Intron Rank:
148055
Intron Class:
major
Intron Phase:
Intron Coordinates:
10502122 - 10504437
Intron Length:
2316

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
GCCTTTATTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAAATAT
U12 Branch Point Sequence:
TTTGCCTTTATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.7
83.9
30.3
Major BPS
59.7
0.24
1.1
55.7
39.9
Major PPT
78.8
0.65
0.9
72.3
36.6
Minor 5ss
36.5
-1.5
2.9
49.7
46.6
Minor BPS
70.7
0.73
1.7
87.87
37.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029707
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027863
10501087 - 10504544
3458