Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_10530818_10531028_F

Intron Information:

Intron Rank:

123472

Intron Class:

major

Intron Phase:

Intron Coordinates:

10530818 - 10531028

Intron Length:

211

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGAGAT

5'SS Class:

strong_major

3'SS Sequence:

TGCCTTGCTCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTCTAAT

U12 Branch Point Sequence:

CCTTCTCTAATG

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

92.3

0.8

84.2

26.4

Major BPS

82.2

0.8

0.9

81.6

Major PPT

74.1

0.54

0.9

65.1

41.2

Minor 5ss

32.1

-2

3.5

46.6

48.7

Minor BPS

54.9

0.01

1.8

59.17

43.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000016585

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023597

10525916 - 10538112

12197