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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_10531535_10531830_F

Intron Information:

Intron Rank:
123469
Intron Class:
major
Intron Phase:
Intron Coordinates:
10531535 - 10531830
Intron Length:
296

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGAGG
5'SS Class:
major
3'SS Sequence:
TTTCCCCCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTCAT
U12 Branch Point Sequence:
GGTCTCCAAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
66.7
44.4
Major BPS
78.3
0.7
0.8
77.7
26.1
Major PPT
74.4
0.55
0.7
66.8
29.7
Minor 5ss
31
-2.2
3.2
39.7
45.9
Minor BPS
47.5
-0.1
2
67.65
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016585
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023597
10525916 - 10538112
12197
ENSAPLT00000018917
10530957 - 10535583
4627