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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_10531890_10534531_F

Intron Information:

Intron Rank:
123470
Intron Class:
major
Intron Phase:
Intron Coordinates:
10531890 - 10534531
Intron Length:
2642

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTATGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TCCCCTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACAAAT
U12 Branch Point Sequence:
CTTCTGCTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
80
34.6
Major BPS
60.7
0.27
1
65.3
28.1
Major PPT
82.6
0.73
0.7
80
25.4
Minor 5ss
44
-0.7
2.6
60.3
44.3
Minor BPS
46.8
-0.2
2.3
64.87
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016585
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023597
10525916 - 10538112
12197
ENSAPLT00000018917
10530957 - 10535583
4627