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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_10545755_10553982_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10545755 - 10553982
Intron Length:
8228

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGGGCC
5'SS Class:
major
3'SS Sequence:
GCCTGTGTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCATCAG
U12 Branch Point Sequence:
GGGCCATCAGCG
Flanking Amino Acid:
RSCIFFKELEVGDQMKLLQN
Intron Amino Acid Position:
218

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
71.5
33.9
Major BPS
45.8
-0.2
1.5
51.3
42.7
Major PPT
71.5
0.48
1
64.2
41.5
Minor 5ss
29.1
-2.4
3.7
41.3
45.5
Minor BPS
40.2
-0.8
1.9
40.66
42.5

Associated Gene:

Gene:
NR5A1
Ensembl Gene ID:
ENSAPLG00000018502
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046679
10541385 - 10558159
16775