Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_10580306_10585295_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10580306 - 10585295

Intron Length:

4990

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGGCGC

5'SS Class:

strong_major

3'SS Sequence:

CTCTGTCCTCCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTTCAC

U12 Branch Point Sequence:

GTGTCCTGAAGG

Flanking Amino Acid:

KYSPSDDELHRFSEEGMEVM

Intron Amino Acid Position:

318

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.5

0.77

0.9

63.9

42.4

Major BPS

74.9

0.62

1.1

77.4

37.4

Major PPT

78.4

0.64

0.8

69.3

Minor 5ss

25.7

-2.8

3.1

32.8

42.2

Minor BPS

55.3

0.03

1.9

61.1

46.2

Associated Gene:

Gene:

NR6A1

Ensembl Gene ID:

ENSAPLG00000026220

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017494

10572062 - 10597109

25048

ENSAPLT00000034448

10572062 - 10638238

66177