Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_10587522_10589261_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10587522 - 10589261

Intron Length:

1740

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGCACA

5'SS Class:

strong_major

3'SS Sequence:

TTATGTCTGAAAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATCTTAT

U12 Branch Point Sequence:

TTGGCACTAACT

Flanking Amino Acid:

GRNKSIGPVQISEEEIERIM

Intron Amino Acid Position:

106

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.85

0.9

76.7

33.9

Major BPS

82.6

0.81

0.8

71.7

Major PPT

61.6

0.26

1.2

63.7

41.9

Minor 5ss

34.2

-1.8

2.8

40.7

45.3

Minor BPS

53.7

0.19

2.1

77.96

Associated Gene:

Gene:

NR6A1

Ensembl Gene ID:

ENSAPLG00000026220

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034448

10572062 - 10638238

66177

ENSAPLT00000017494

10572062 - 10597109

25048