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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_10634030_10638222_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10634030 - 10638222
Intron Length:
4193

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGACAG
5'SS Class:
major
3'SS Sequence:
CCTTTCTCATTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
ATTTTCTCATTT
Flanking Amino Acid:
MFPGTATDVEQMSSS
Intron Amino Acid Position:
6

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
62.5
43.8
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
74.4
0.55
0.8
74.6
29.1
Minor 5ss
29.9
-2.3
3.3
37.9
47
Minor BPS
57.9
0.32
1.8
78.15
38.6

Associated Gene:

Gene:
NR6A1
Ensembl Gene ID:
ENSAPLG00000026220
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034448
10572062 - 10638238
66177