Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_10669646_10670275_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

10669646 - 10670275

Intron Length:

630

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCG|GTAAGGGAA

5'SS Class:

strong_major

3'SS Sequence:

TCTTGCGAAATAG|A

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TGCCTTTTAATC

Flanking Amino Acid:

TKLWKFQQQHRQVLDNRYGL

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.8

0.73

69.6

36.7

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

59.6

0.22

55.2

39.4

Minor 5ss

-2.4

3.5

46.9

Minor BPS

61.4

0.34

1.2

63.56

36.4

Associated Gene:

Gene:

SCAI

Ensembl Gene ID:

ENSAPLG00000003982

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004121

10662969 - 10687422

24454