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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_10672463_10673818_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10672463 - 10673818
Intron Length:
1356

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTTAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTACGTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TGTCTTTGAACT
Flanking Amino Acid:
KMDVVKDLVKELSDEIEDYT
Intron Amino Acid Position:
163

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
82
26.2
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
77.8
0.62
1
78.2
35
Minor 5ss
45.6
-0.5
2.5
57.6
47.1
Minor BPS
63.7
0.51
1.4
78.87
36.8

Associated Gene:

Gene:
SCAI
Ensembl Gene ID:
ENSAPLG00000003982
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004121
10662969 - 10687422
24454