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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_10673918_10674691_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10673918 - 10674691
Intron Length:
774

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAATA
5'SS Class:
strong_major
3'SS Sequence:
GTTGTTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
AATTCCTTATTT
Flanking Amino Acid:
VLQEVAAFIEADPVMVLNDD
Intron Amino Acid Position:
196

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.7
85.9
23.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
82.8
0.74
0.8
81.2
36.5
Minor 5ss
31.6
-2.1
3
39.7
45.8
Minor BPS
72
0.77
1.5
83.77
37.1

Associated Gene:

Gene:
SCAI
Ensembl Gene ID:
ENSAPLG00000003982
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004121
10662969 - 10687422
24454