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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_10675789_10676507_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10675789 - 10676507
Intron Length:
719

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTTCC
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTCAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAA
U12 Branch Point Sequence:
TGTTTTTCAACA
Flanking Amino Acid:
ASQMNKPGMQESTEKPARRE
Intron Amino Acid Position:
281

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
0.9
74.7
29.4
Major BPS
69.8
0.49
1
70.3
31.8
Major PPT
81.1
0.7
0.9
77.7
35.5
Minor 5ss
37.7
-1.4
2.8
45.3
36.6
Minor BPS
67
0.53
1.5
75.9
35.2

Associated Gene:

Gene:
SCAI
Ensembl Gene ID:
ENSAPLG00000003982
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004121
10662969 - 10687422
24454