About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_10677239_10679334_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10677239 - 10679334
Intron Length:
2096

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAATAA
5'SS Class:
major
3'SS Sequence:
TTACCGTGTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
CTAATTTTAACT
Flanking Amino Acid:
VFPSGRSDSEGPYDFGGVLT
Intron Amino Acid Position:
341

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1
67.4
34
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
66.7
0.38
1
61.8
39.7
Minor 5ss
35.5
-1.6
3.3
47
48.4
Minor BPS
67.4
0.62
1.3
76.79
39.9

Associated Gene:

Gene:
SCAI
Ensembl Gene ID:
ENSAPLG00000003982
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004121
10662969 - 10687422
24454