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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_10685862_10686055_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10685862 - 10686055
Intron Length:
194

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTACGTGCC
5'SS Class:
strong_major
3'SS Sequence:
CCTTCCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
CCTTTCTAACTT
Flanking Amino Acid:
AQLLTHSRSIDQSFLQFFGD
Intron Amino Acid Position:
484

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.9
75.5
35.8
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
85.5
0.8
0.7
80
25.3
Minor 5ss
32.9
-2
3.3
44.7
43.3
Minor BPS
48.7
-0
1.9
66.07
45.7

Associated Gene:

Gene:
SCAI
Ensembl Gene ID:
ENSAPLG00000003982
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004121
10662969 - 10687422
24454