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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_10698187_10698307_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10698187 - 10698307
Intron Length:
121

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TCAAAATTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TTTCTCAAAATT
Flanking Amino Acid:
IQKLSVDLQNAQVAGSGCEK
Intron Amino Acid Position:
135

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
1
84.3
27.2
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
66.9
0.38
1
62.9
42.7
Minor 5ss
47.2
-0.3
2.8
66.2
38.1
Minor BPS
52.5
0.16
1.9
77.83
38.8

Associated Gene:

Gene:
GOLGA1
Ensembl Gene ID:
ENSAPLG00000003658
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003773
10697092 - 10707881
10790