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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_10698754_10699214_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10698754 - 10699214
Intron Length:
461

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTTTA
5'SS Class:
strong_major
3'SS Sequence:
ATATAATCTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATAAT
U12 Branch Point Sequence:
TGTTCTTCAACC
Flanking Amino Acid:
DEHMQELLKEKAALELKLDE
Intron Amino Acid Position:
209

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.9
86
25
Major BPS
79
0.72
1
78.4
31.2
Major PPT
72.3
0.5
1
67.7
42.7
Minor 5ss
43.8
-0.7
2.8
58.6
45.8
Minor BPS
72.2
0.68
1.5
79.58
35.3

Associated Gene:

Gene:
GOLGA1
Ensembl Gene ID:
ENSAPLG00000003658
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003773
10697092 - 10707881
10790