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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_10700289_10700512_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10700289 - 10700512
Intron Length:
224

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
CTTTATTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TAGTACTTAAGC
Flanking Amino Acid:
FDKTSTQHKISQLEKENEHL
Intron Amino Acid Position:
324

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
76.2
32.6
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
89
0.88
0.7
83.5
31.2
Minor 5ss
37.9
-1.4
2.7
45.5
37.1
Minor BPS
59.8
0.29
1.9
68.6
42.6

Associated Gene:

Gene:
GOLGA1
Ensembl Gene ID:
ENSAPLG00000003658
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003773
10697092 - 10707881
10790