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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_10700609_10701354_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10700609 - 10701354
Intron Length:
746

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGCT
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTGAA
U12 Branch Point Sequence:
AACATCTGAATT
Flanking Amino Acid:
NQESELNRLKKELSSRETVS
Intron Amino Acid Position:
356

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
79.6
32.5
Major BPS
73.3
0.58
0.9
63.4
35.6
Major PPT
88.9
0.88
0.7
84
31
Minor 5ss
31.9
-2.1
3.6
47.6
48
Minor BPS
53.2
0.18
1.4
64.91
39.6

Associated Gene:

Gene:
GOLGA1
Ensembl Gene ID:
ENSAPLG00000003658
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003773
10697092 - 10707881
10790