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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_10702777_10703460_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10702777 - 10703460
Intron Length:
684

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGATCA
5'SS Class:
major
3'SS Sequence:
TCTCCTTCCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCAGAA
U12 Branch Point Sequence:
TGATACTAAGCA
Flanking Amino Acid:
QKEELNQLRQDHEAVLLQMH
Intron Amino Acid Position:
420

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1.1
72.5
32.9
Major BPS
64.9
0.37
1
61
37.5
Major PPT
81.9
0.72
0.7
80.4
24.9
Minor 5ss
34.6
-1.8
2.8
40.7
45
Minor BPS
47.7
-0.1
2
62.37
43.2

Associated Gene:

Gene:
GOLGA1
Ensembl Gene ID:
ENSAPLG00000003658
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003773
10697092 - 10707881
10790